PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5392s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 334aa    MW: 37430.8 Da    PI: 8.8666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5392s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13153200355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  Cagra.5392s0006.1.p 153 QEHILAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAIKHIKHLQ 200
                          56999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.713150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-11153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17154219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-17154217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-12155204No hitNo description
SMARTSM003533.5E-15156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MATTKNVLST RWTSELDIEE YSIIHQYHMN SLVGDFPQSL SSLDDINNSY NFDASCNNDF  60
VEEKPSKILK TTHISPKIHP FSSSNTPLSM NQPSSRILSF EKTGLKVMNH NSPNLIFSPK  120
EEEIGLPDQR KSKLIIRGTK RAQTSTRSQA NAQEHILAER KRREKLTQRF VALSALVPGL  180
KKMDKASVLG DAIKHIKHLQ EIVKEYEEQK QERTMESMVL VKKSQLVLDE THQPSSSSSS  240
DGNRDCSSSN LPEIEVRVSG NDVLIKILCE KQKGNVIKIM GEIEKLGLLI TNSNVLPFGP  300
TFDISIIAQK NINFDIKIED LVKNLSCGIS KLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295910.10.0hypothetical protein CARUB_v10025041mg
SwissprotQ1PF171e-162BH018_ARATH; Transcription factor bHLH18
TrEMBLR0HXJ30.0R0HXJ3_9BRAS; Uncharacterized protein
STRINGBra030210.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-163bHLH family protein